All functions

BADM

Biomass and soil data from FluxNet sites

BADM_IC_process()

BADM_IC_process

Clean_Tucson()

Clean_Tucson

EPA_ecoregion_finder()

EPA_ecoregion_finder

IC_ISCN_SOC()

Extract ISCN SOC initial conditions from existing ISCN database.

InventoryGrowthFusion()

InventoryGrowthFusion

InventoryGrowthFusionDiagnostics()

InventoryGrowthFusionDiagnostics

Read.IC.info.BADM()

Read.IC.info.BADM

Read_Tucson()

Read_Tucson

Soilgrids_SoilC_prep()

Prepare Soilgrids SoilC data for the SDA workflow.

buildJAGSdata_InventoryRings()

Format ring & plot data for JAGA

cohort2pool()

cohort2pool

dataone_download()

DataONE download

download.SM_CDS()

Download CDS soil moisture data for the SDA workflow.

download_NEON_soilmoist()

Download NEON Soil Water Content and Soil Salinity data by date and site name

download_package_rm()

download_packages

ens_veg_module()

Sampling/ensemble module

extract.stringCode()

extract.stringCode

extract_FIA()

extract_FIA

extract_NEON_veg()

extract_NEON_veg

extract_SM_CDS()

Extract CDS soil moisture data for the SDA workflow.

extract_soil_gssurgo()

Extract soil data from gssurgo

extract_soil_nc()

Extract soil data from the gridpoint closest to a location

extract_veg()

extract_veg

fia.to.psscss()

Create pss/css files based on data in the fia database

format_identifier()

format_identifier

from.Tag()

from.Tag

from.TreeCode()

from.TreeCode

gSSURGO.Query()

This function queries the gSSURGO database for a series of map unit keys

get.attributes()

Retrieve attribute information from a vector or raster layer

get.soil()

get.soil

get_resource_map()

get_resource_map

get_veg_module()

Load/extract + match species module

ic_process()

ic_process

id_resolveable()

id_resolveable

iscn_soc

Soil organic carbon (SOC) density based on eco-region level 2 code from the ISCN database.

load_veg()

load_veg

matchInventoryRings()

matchInventoryRings

match_pft()

match_pft

match_species_id()

Match BETY species ID.

mpot2smoist()

Convert a matric potential to a soil moisture

netcdf.writer.BADM()

netcdf.writer.BADAM

parse.MatrixNames()

parse.MatrixNames

partition_roots()

partition_roots

plot2AGB()

plot2AGB

pool_ic_list2netcdf()

pool_ic_list2netcdf

pool_ic_netcdf2list()

pool_ic_netcdf2list

prepare_pools()

prepare_pools

put_veg_module()

Match species to PFTs + veg2model module

sample_ic()

sample_ic

sclass()

This function determines the soil class number based on the fraction of sand, clay, and silt

shp2kml()

Convert shapefile to KML

soil.units()

Get standard units for a soil variable

soil2netcdf()

Save soil texture & parameters in PEcAn standard netCDF CF

soil_class

Default parameters for calculating soil properties from sand & clay content

soil_params()

Estimate soil parameters from texture class or sand/silt/clay

soil_process()

Module for managing soil texture extraction

soilgrids_soilC_extract()

soilgrids_soilC_extract

subset_layer()

Function to subset and clip a GIS vector or raster layer by a bounding box or clip/subset layer (e.g. shapefile/KML)

to.Tag()

to.Tag

to.TreeCode()

to.TreeCode

write_ic()

write_ic

write_veg()

write_veg