Match species to PFTs + veg2model module

Match species to PFTs + veg2model module

put_veg_module(
  getveg.id,
  dbparms,
  input_veg,
  pfts,
  outfolder,
  n.ensemble,
  dir,
  machine,
  model,
  start_date,
  end_date,
  new_site,
  host,
  overwrite
)

Arguments

getveg.id

list, input.id and dbfile.id of the IC file in intermediate pecan standard

dbparms

list, settings$database info reqired for opening a connection to DB

input_veg

list, this is a sublist of settings$run$inputs that has info about source, id, metadata of the requested IC file

pfts

list, same as settings$pfts

outfolder

path to where the processed files will be written

n.ensemble

integer, ensemble member number

dir

dir path to dbfiles on local machine

machine

data frame, DB info regarding localhost machine id/hostname etc.

model

model name, e.g. "ED2"

start_date

date in "YYYY-MM-DD" format, in case of source==FIA it's the settings$run$start.date, otherwise start_date of the IC file in DB

end_date

date in "YYYY-MM-DD" format, in case of source==FIA it's the settings$run$end.date, otherwise end_date of the IC file in DB

new_site

data frame, id/lat/lon/name info about the site

host

list, host info as in settings$host, host$name forced to be "localhost" upstream

overwrite

logical flag for convert_input

Author

Istem Fer