Package index • PEcAn.benchmark

All functions
`add_workflow_info()`	Add workflow specific info to settings list for benchmarking
`align_by_first_observation()`	align_first_observation
`align_data()`	Align timeseries data
`align_data_to_data_pft()`	align_data_to_data_pft
`align_pft()`	Align vectors of Plant Functional Type and species.
`bm_settings2pecan_settings()`	Move benchmarking settings back in to original pecan settings object
`calc_benchmark()`	Calculate benchmarking statistics
`calc_metrics()`	calc_metrics
`check_BRR()`	Check whether a run has been registered as a reference run in BETY
`check_if_legal_table()`	check_if_legal_table
`check_if_list_of_pfts()`	check_if_list_of_pfts
`check_if_species_list()`	check_if_species_list
`clean_settings_BRR()`	Cleans PEcAn settings file and prepares the settings to be saved in a reference run record in BETY
`create_BRR()`	Create benchmark reference run and ensemble
`define_benchmark()`	Benchmark Definition: Retrieve or Create Bety Benchmarking Records
`format_wide2long()`	Function to convert wide format to long format
`get_species_list_standard()`	get_species_list_standard
`load_csv()`	load_csv
`load_data()`	load data
`load_rds()`	load_rds
`load_tab_separated_values()`	Load files with mime-type 'text/tab-separated-values'
`load_x_netcdf()`	Load from netCDF
`match_timestep()`	Match time step
`mean_over_larger_timestep()`	Calculate benchmarking statistics
`metric_AME()`	Absolute Maximum Error
`metric_Frechet()`	Frechet Distance
`metric_MAE()`	Mean Absolute Error
`metric_MSE()`	Mean Square Error
`metric_PPMC()`	Pearson Product Moment Correlation
`metric_R2()`	Coefficient of Determination (R2)
`metric_RAE()`	Relative Absolute Error
`metric_RMSE()`	Root Mean Square Error
`metric_cor()`	Correlation Coefficient
`metric_lmDiag_plot()`	Linear Regression Diagnostic Plot
`metric_residual_plot()`	Residual Plot
`metric_run()`	Model Run Check
`metric_scatter_plot()`	Scatter Plot
`metric_timeseries_plot()`	Timeseries Plot
`read_settings_BRR()`	Read settings from database using reference run id

Reference

All functions