Start qsub runs — start_qsub • PEcAn.remote

Start qsub runs

start_qsub(
  run,
  qsub_string,
  rundir,
  host,
  host_rundir,
  host_outdir,
  stdout_log,
  stderr_log,
  job_script,
  qsub_extra = NULL
)

Arguments

run: (numeric) run ID, as an integer
qsub_string: qsub command string, with arguments. Usually from settings$host$qsub
rundir: Local run directory. Usually from settings$rundir
host: Remote host, as a list or character. Usually from settings$host.
host_rundir: Remote host run directory. Usually from settings$host$rundir
host_outdir: Remote host output directory. Usually from settings$host$outdir
stdout_log: Logfile for redirecting stdout.
stderr_log: Logfile for redirecting stderr
job_script: Base name (no path) of script to run. Usually either job.sh or launcher.sh.
qsub_extra: Extra qsub arguments. Usually from settings$host$modellauncher$qsub.extra

Output of qsub command, as a character. This output can be parsed for ascertaining submission success.