Paramater Data Assimilation using emulator

pda.emulator(
  settings,
  external.data = NULL,
  external.priors = NULL,
  external.knots = NULL,
  external.formats = NULL,
  ensemble.id = NULL,
  params.id = NULL,
  param.names = NULL,
  prior.id = NULL,
  chain = NULL,
  iter = NULL,
  adapt = NULL,
  adj.min = NULL,
  ar.target = NULL,
  jvar = NULL,
  n.knot = NULL,
  individual = TRUE,
  remote = FALSE
)

Arguments

settings: a pecan settings list
external.data: list of external inputs
external.priors: list of external priors
external.knots: list of external knots
external.formats: bety formats used when function is used without a DB connection, e.g. remote
ensemble.id: ensemble IDs
params.id: id of pars
param.names: names of pars
prior.id: ids of priors
chain: how many chains
iter: how many iterations
adapt: adaptation intervals
adj.min: to be used in adjustment
ar.target: acceptance rate target
jvar: jump variance
n.knot: number of knots requested
individual: logical, if TRUE it becomes a site-level PDA
remote: logical, if TRUE runs are submitted to remote and objects prepared accordingly

Value

nothing. Diagnostic plots, MCMC samples, and posterior distributions are saved as files and db records.

Author

Mike Dietze

Ryan Kelly, Istem Fer