Run meta analysis — run.meta.analysis • PEcAn.MA

This will use the following items from settings:

settings$pfts
settings$database$bety
settings$database$dbfiles
settings$meta.analysis$update

run.meta.analysis(
  pfts,
  iterations,
  random = TRUE,
  threshold = 1.2,
  dbfiles,
  database,
  use_ghs = TRUE,
  update = FALSE
)

Arguments

pfts: the list of pfts to get traits for
iterations: the number of iterations for the mcmc analysis
random: should random effects be used?
threshold: Gelman-Rubin convergence diagnostic, passed on to pecan.ma.summary
dbfiles: location where previous results are found
database: database connection parameters
use_ghs: do not exclude greenhouse data if TRUE
update: logical: Rerun the meta-analysis if result files already exist?

Value

nothing, as side effect saves trait.mcmc created by pecan.ma and post.distns created by approx.posterior(trait.mcmc, ...) to trait.mcmc.Rdata and post.distns.Rdata, respectively

Author

Shawn Serbin, David LeBauer