Code to convert ED2's -T- HDF5 output into netCDF format

Modified from code to convert ED2's HDF5 output into the NACP Intercomparison format (ALMA using netCDF)

model2netcdf.ED2(
  outdir,
  sitelat,
  sitelon,
  start_date,
  end_date,
  pfts,
  settings = NULL,
  process_partial = FALSE
)

Arguments

outdir

Location of ED model output (e.g. a path to a single ensemble output)

sitelat

Latitude of the site

sitelon

Longitude of the site

start_date

Start time of the simulation

end_date

End time of the simulation

pfts

a named vector of PFT numbers where the names are PFT names

settings

pecan settings object

process_partial

should failed runs be processed? Defaults to FALSE. TRUE will generate .nc files for runs that have generated some, but not all, of the expected outputs

Details

if settings is provided, then values for missing arguments sitelat, sitelon, start_date, end_date, and pfts will be taken from it

Author

Michael Dietze, Shawn Serbin, Rob Kooper, Toni Viskari, Istem Fer