run BASGRA model

BASGRA wrapper function. Runs and writes model outputs in PEcAn standard.

run_BASGRA(
  run_met,
  run_params,
  site_harvest,
  site_fertilize,
  start_date,
  end_date,
  outdir,
  sitelat,
  sitelon,
  co2_file = NULL,
  write_raw_output = FALSE
)

Arguments

run_met

path to CF met

run_params

parameter vector

site_harvest

path to harvest file

site_fertilize

path to fertilizer application file

start_date

start time of the simulation

end_date

end time of the simulation

outdir

where to write BASGRA output

sitelat

latitude of the site

sitelon

longitude of the site

co2_file

path to daily atmospheric CO2 concentration file, optional, defaults to 350 ppm when missing

write_raw_output

write raw output in csv or not

Details

BASGRA is written in fortran is run through R by wrapper functions written by Marcel Van Oijen. This function makes use of those wrappers but gives control of datastream in and out of the model to PEcAn. With this function we skip model2netcdf, we can also skip met2model but keeping it for now. write.config.BASGRA modifies args of this function through template.job then job.sh runs calls this function to run the model

Author

Istem Fer, Julius Vira